PhD student biomedical data science, ontologies and linked data

Universitair Medisch Centrum Groningen

Universitair Medisch Centrum Groningen

Functiegebied:
PhD student
Regio:
Groningen
Standplaats:
Regio Groningen
Aanstelling:
Niet nader bepaald
Dienstverband:
Niet nader bepaald
Plaatsingsdatum:
7-11-2018

Vacatureomschrijving

Working environment

Job description

We are looking for a PhD student for our ‘FAIR’ research line towards integrated analysis of large biobanks and multi-center studies in (rare)disease. Big data holds huge promise to accelerate research in human health and disease, but biomedical data is very heterogeneous and fragmented impeding integrated analysis. You will research ontologies and linked data models and methods and develop smart data integration tools for large scale retrospective data integration and ‘federated’ analysis, considering the fact that health data is often privacy sensitive and involve security/anonymity constraints. You will publish 3+ publications and present at international conferences together with your PI and colleagues. Your laboratory will be our participation in large (inter)national research projects (e.g. EUCAN-Connect, LifeCycle, BBMRI, ELIXIR, Solve-RD, CORBEL) and the MOLGENIS open source software (Java/Python/Javascript/Html/REST/R) where you can impact users that use your clever models, methods and tools on a daily basis to further science and improve health care.

Work environment
We offer an exciting multidisciplinary environment with many international collaborations in the area of area of biobanking, cohorts, (rare) disease, multi-omics and data science/bioinformatics. The position is part of the Genomics Coordination Centre (GCC), the ‘big data’ research & service hub of the Department of Genetics, University Medical Centre Groningen (UMCG) and University of Groningen (rank 66 worldwide, 3rd best place to work in EU). Our mission is to accelerate scientific discovery in health data with innovative methods and tools that expedite medical research and improves people's lives.

GCC is at the heart of the exciting big data transformation in life sciences with large population biobanks and patient cohorts and new biotechnologies producing terabytes of epidemiological genetic, molecular and imaging data offering unprecedented possibilities to diagnose disease and improve health status. You will be part of a social and ambitious team of 1 professor, 2 postdocs, 4 project/team leaders, 1 community manager, 8 programmers (2 scrum teams), 4 data managers and 4 Phd students, all on a mission to enable large scale integrated health data analyses towards better understanding and prediction of disease and health.

What do we need

The ideal candidate has a MSc in Data Science, Artificial Intelligence, Bioinformatics, Computer Science or a related field who:
  • Has a passion for data models/ontologies/linked data/semantic methods/knowledge engineering
  • Loves to translate theory into software that can be widely used in practice
  • Thrives in international collaborations and with researchers from other disciplines
  • Has pro-active, can do, collaborative, open attitude
  • Communicates easily in English speech and scientific writing (with good publication track record)
  • Is prepared to travel (inter)nationally

The UMCG has a preventive Hepatitis B policy. The UMCG can provide you with the vaccination, should it be required for your position.

In case of specific professions a ‘Certificate of Good Behaviour’ is required.

What do we offer

An appointment as a PhD student for four years (with a possible extension); embedded in a dynamic department of top genetic researchers (including a Spinoza prize winner), a large group of programmers to publish with, a service desk that assists a wide range of researchers, and the opportunity to work in large international networks.

Your salary is € 2.357,- gross per month in the first year up to a maximum of € 3.020,- gross per month in the last year (scale PhD) depending on qualifications. In addition, the UMCG will offer you 8% holiday pay and 8.3% end-of-year bonus. The terms of employment comply with the Collective Labour Agreement for Medical Centers (CAO-UMC).

For more information
Please contact Prof. Morris Swertz, Head of the Genomics Coordination Centre, by telephone contactinformatie (telefoonnummer) or e-mail: m.a.swertz@rug.nl (please do not use e-mailadress for applications).

Links

UMCG Corporate information/research
Welcome tot Groningen

Applying for a job

Please use the the digital application form at the bottom of this page - only these will be processed.
You can apply until 3 December 2018.
Immediately after sending the digital application form you will receive an email- confirmation with further information.


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